Cross-continents whitefly secondary symbiont revealed by metabarcoding
Analyses of symbiotic bacterial communities in the plant pest Bemisia tabaci reveal high prevalence of Candidatus Hemipteriphilus asiaticus on the African continent
Whiteflies are serious global pests that feed on phloem sap of many agricultural crop plants. Like other phloem feeders, whiteflies rely on a primary-symbiont to supply their poor, sugar-based diet. Over time, the genomes of primary-symbionts become degraded, and they are either been replaced or complemented by co-hosted secondary-symbionts (McCutcheon and Moran 2012). In Bemisia tabaci species complex, the primary-symbiont is Candidatus Portiera aleyrodidarium, with seven secondary-symbionts that have been described to date. The prevalence and dynamics of these secondary-symbionts have been studied in various whitefly populations and genetic groups around the world, and certain combinations are determined under specific biotic and environmental factors (Zchori-Fein et al. 2014).
To understand the potential metabolic or other interactions of various secondary-symbionts with Ca. Portiera aleyrodidarium and the hosts, Mouton et al. used metabarcoding approach and diagnostic PCR confirmation, to describe symbiont compositions in a collection of whiteflies from eight populations with four genetic groups in Burkina Faso. They found that one of the previously recorded secondary-symbiont from Asian whitefly populations, Candidatus Hemipteriphilus asiaticus, is also found in the tested African whiteflies. The newly identified Ca. Hemipteriphilus asiaticus forms a different strain than the ones described in Asia, and is found in high prevalence in six of the tested populations and in three genetic groups. They also showed that Portiera densities are not affected by the presence of Ca. Hemipteriphilus asiaticus. The authors suggest that based on its high prevalence, Ca. Hemipteriphilus asiaticus may benefit certain whitefly populations, however, there is no attempt to test this assumption or to relate it to environmental factors, or to identify the source of introduction.
Mouton et al. bring new perspectives to the study of complex hemipteran symbioses, emphasizing the need to use both unbiased approaches such as metabarcoding, together with a priori methods such as PCR, in order to receive a complete description of symbiont population structures. Their findings are awaiting future screens for this secondary-symbiont, as well as its functional genomics and experimental manipulations to clarify its role. Discoveries on whitefly-symbionts delicate interactions are required to develop alternative control strategies for this worldly devastating pest.
McCutcheon JP, Moran NA (2012) Extreme genome reduction in symbiotic bacteria. Nature Reviews Microbiology, 10, 13–26. https://doi.org/10.1038/nrmicro2670
Mouton L, Henri H, Romba R, Belgaidi Z, Gnankiné O, Vavre F (2022) Analyses of symbiotic bacterial communities in the plant pest Bemisia tabaci reveal high prevalence of Candidatus Hemipteriphilus asiaticus on the African continent. bioRxiv, 2021.10.06.463217, ver. 3 peer-reviewed and recommended by Peer Community in Zoology. https://doi.org/10.1101/2021.10.06.463217
Zchori-Fein E, Lahav T, Freilich S (2014) Variations in the identity and complexity of endosymbiont combinations in whitefly hosts. Frontiers in Microbiology, 5. https://doi.org/10.3389/fmicb.2014.00310
Yuval Gottlieb (2022) Cross-continents whitefly secondary symbiont revealed by metabarcoding. Peer Community in Zoology, 100011. https://doi.org/10.24072/pci.zool.100011
Evaluation round #1
DOI or URL of the preprint: https://doi.org/10.1101/2021.10.06.463217
Version of the preprint: 1
Author's Reply, 11 Feb 2022
Decision by Yuval Gottlieb, 11 Dec 2021
Dear Laurence Mouton,
Your preprint has been reviewed by three reviewers.
We all agree that your findings regarding the under studied symbiont Ca. Hemipteriphilus asiaticus of B. tabaci in Africa, are interesting and important. They bring new perspectives to the study of hemipteran symbiosis, both methodology- and conceptually wise. However, it needs some improvement, both in analysis and in formatting before it can be recommended further.
Here are the main comments that need your attention:
1. Correction of the terminology of the method and the nomenclature of the symbionts.
2. Better defining of your sample material, and the sample size.
3. Reanalysis/classification of the data according to SILVA and the primers used.
4. Deposit the sequencing data in an accessible and accepted format (supplementary and SRA).
5. Improving the phylogeny and the symbiont consortium figures.
Additionally, please see all of the reviewers’ comments and address them accordingly.
Looking forward seeing your revisions on the second round.